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- Congenital anomaly of testis
- Congenital anomaly of the hand
- Congenital anomaly of the hematopoietic system
- Congenital anomaly of the kidney
- Congenital anomaly of the pelvis
- Congenital anomaly of the thymus
- Congenital anomaly of the thyroid gland
- Congenital anomaly of the urinary system
- Congenital anomaly of thoracic cage
- Congenital anomaly of thyroid cartilage
- Congenital anomaly of toe
- Congenital anomaly of tongue
- Congenital anomaly of trachea
- Congenital anomaly of tracheal cartilage
- Congenital anomaly of trunk
- Congenital anomaly of umbilical artery
- Congenital anomaly of upper alimentary tract
- Congenital anomaly of upper limb
- Congenital anomaly of upper respiratory system
- Congenital anomaly of ureter
- Congenital anomaly of urethra
- Congenital anomaly of urinary tract
- Congenital anomaly of vagina
- Congenital anomaly of vas deferens
- Congenital anomaly of vein
- Congenital anomaly of vena cava
- Congenital anomaly of vertebral column
- Congenital anomaly of vulva
- congenital anorectal malformation
- congenital anosmia
- congenital anotia
- Congenital anterior capsular pigmentation
- congenital anterior staphyloma
- Congenital anteversion of femur
- Congenital aortic insufficiency
- congenital aortic regurgitation
- congenital aortic stenosis
- congenital aorticopulmonary fenestration
- congenital aphacia
- congenital aphasia of the pituitary
- Congenital aplasia of aorta
- Congenital aplasia of inner ear
- Congenital aplasia of lung
- Congenital aplasia of part of brain
- Congenital aplasia of spermatic cord
- Congenital aplasia of testis
- Congenital aplasia of uterus
- congenital aplastic anemia
- congenital appendage of nose
- congenital appendage of the nose
- congenital aqueductal stenosis
- Congenital arterial malformation
- Congenital arterial proliferation
- Congenital arteriovenous aneurysm
- congenital arteriovenous communication
- congenital artero-venous fistula
- congenital arthrogryposis
- Congenital articular malformation
- congenital astigmatism
- Congenital asymmetric septal hypertrophy
- Congenital asymmetry of jaw
- congenital ataxia-myoatrophy syndrome
- congenital atelectasis
- Congenital atelectasis of lung
- congenital athyrosis
- congenital atonic sclerotic muscular dystrophy
- congenital atransferrinemia
- Congenital atresia
- Congenital atresia of anterior nares
- Congenital atresia of aorta
- Congenital atresia of aortic arch
- Congenital atresia of aortic valve
- Congenital atresia of artery
- congenital atresia of biliary duct
- congenital atresia of biliary tract
- Congenital atresia of broad ligament
- Congenital atresia of bronchus
- Congenital atresia of cardiac vein
- congenital atresia of choana
- Congenital atresia of colon
- congenital atresia of coronary artery
- Congenital atresia of duodenum
- Congenital atresia of epiglottis
- Congenital atresia of esophagus
- congenital atresia of external acoustic meatus
- Congenital atresia of external auditory canal
- Congenital atresia of extrahepatic bile duct
- Congenital atresia of fallopian tube
- Congenital atresia of glottis
- Congenital atresia of ileum
- Congenital atresia of jejunum
- Congenital atresia of larynx
- Congenital atresia of mitral valve
- Congenital atresia of nares
- congenital atresia of naso-lacrimal duct
- Congenital atresia of nasopharynx
- Congenital atresia of pharynx
- congenital atresia of posterior nares
- Congenital atresia of pulmonary artery
- Congenital atresia of pulmonary valve
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