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- Congenital absence of part of brain
- Congenital absence of part of limb
- Congenital absence of patella
- Congenital absence of pectoral muscle
- congenital absence of penis
- Congenital absence of pinna
- Congenital absence of prostate
- Congenital absence of proximal portion of limb
- Congenital absence of pulmonary artery
- Congenital absence of pulmonary valve
- Congenital absence of punctum lacrimale
- Congenital absence of radius
- Congenital absence of rectum
- Congenital absence of rib
- Congenital absence of right pulmonary artery
- congenital absence of salivary gland
- Congenital absence of skeletal muscle
- congenital absence of skin
- Congenital absence of skull bones
- Congenital absence of small intestine
- Congenital absence of spermatic cord
- Congenital absence of spleen
- Congenital absence of sternum
- Congenital absence of superior vena cava
- congenital absence of teeth
- congenital absence of the breasts and nipples
- congenital absence of the skin
- congenital absence of the vas deferentia
- Congenital absence of thigh and leg
- Congenital absence of tibia
- Congenital absence of tibia and fibula
- Congenital absence of toe
- Congenital absence of trachea
- Congenital absence of umbilical artery
- Congenital absence of upper limb
- Congenital absence of ureter
- Congenital absence of uterus
- Congenital absence of uvula
- congenital absence of vagina
- Congenital absence of vas deferens
- Congenital absence of vein
- Congenital absence of vena cava
- Congenital absence of vertebra
- Congenital absence of vulva
- Congenital accessory skin tag
- Congenital accumulation of fluid
- congenital achromatopsia
- congenital acral melanocytic nevus
- congenital acromicria
- congenital acromicria syndrome
- Congenital Addison disease
- Congenital adhesion
- Congenital adhesions of omentum
- Congenital adhesions of peritoneum
- Congenital adhesions of tongue
- congenital adrenal hyperplasia
- congenital adrenal hypoplasia
- congenital adrenal virilism
- congenital adrenalcortical hyperplasia
- congenital adrenocortical hyperlasia
- congenital adrenogenital syndrome
- congenital AFP deficiency
- congenital agammaglobulinemia
- congenital aganglionosis
- congenital agenesis of lung lobe
- congenital agenesis of trachea
- congenital agyria
- Congenital alactasia syndrome
- congenital aleukia
- Congenital alimentary tract anomaly
- congenital alopecia
- congenital amaurosis
- congenital amblyopia
- congenital amputation
- Congenital amputation of lower limb
- Congenital amputation of upper limb
- congenital amyotonia
- congenital anal atresia
- congenital anal stenosis
- congenital analbuminemia
- congenital anemia
- Congenital anemia from fetal blood loss
- congenital anemia-triphalangeal thumb syndrome
- Congenital aneurysm of aorta
- Congenital aneurysm of sinus of Valsalva
- congenital aneurysm of ventricular septum
- Congenital angiomatosis
- Congenital angulation of tibia
- congenital anhidrosis-neurolabyrinthitis syndrome
- Congenital anisocoria
- congenital ankyloblepharon
- congenital ankylosis
- Congenital ankylosis of elbow
- congenital annular groove
- congenital anomalies
- congenital anomalies of breast
- congenital anomalies of chest wall
- congenital anomalies of coronary artery
- congenital anomalies of esophagus
- congenital anomalies of female genital tract
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